Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Gm43908-201ENSMUST00000205074 1472 ntBASIC14.18□□□□□ -0.14
Limch1Q3UH68 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Limch1Q3UH68 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC14.18□□□□□ -0.14
Limch1Q3UH68 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Gm24845-201ENSMUST00000158034 109 ntBASIC14.18□□□□□ -0.14
Limch1Q3UH68 Gm28450-201ENSMUST00000187349 638 ntBASIC14.18□□□□□ -0.14
Limch1Q3UH68 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Gm8385-201ENSMUST00000058999 643 ntBASIC14.18□□□□□ -0.14
Limch1Q3UH68 Gm43447-201ENSMUST00000198471 1535 ntBASIC14.18□□□□□ -0.14
Limch1Q3UH68 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Gm18782-201ENSMUST00000209023 1399 ntBASIC14.18□□□□□ -0.14
Limch1Q3UH68 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Limch1Q3UH68 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Gm14263-201ENSMUST00000117955 746 ntBASIC14.17□□□□□ -0.14
Limch1Q3UH68 Gm13996-201ENSMUST00000118456 430 ntBASIC14.17□□□□□ -0.14
Limch1Q3UH68 Gm14832-201ENSMUST00000121289 322 ntBASIC14.17□□□□□ -0.14
Limch1Q3UH68 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC14.17□□□□□ -0.14
Limch1Q3UH68 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Gm44651-201ENSMUST00000207343 372 ntBASIC14.17□□□□□ -0.14
Limch1Q3UH68 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Gm43174-201ENSMUST00000195914 2445 ntBASIC14.17□□□□□ -0.14
Limch1Q3UH68 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Limch1Q3UH68 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Gm18711-201ENSMUST00000199341 750 ntBASIC14.16□□□□□ -0.14
Limch1Q3UH68 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 AC154222.2-201ENSMUST00000225848 607 ntBASIC14.16□□□□□ -0.14
Limch1Q3UH68 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms