Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Gm14399-202ENSMUST00000108929 813 ntTSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Gm13045-201ENSMUST00000119019 712 ntBASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Gm9192-201ENSMUST00000183221 985 ntBASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Gm28877-201ENSMUST00000191349 604 ntBASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Ighv1-48-201ENSMUST00000191795 294 ntBASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Letm2-206ENSMUST00000210234 837 ntTSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 AC113082.1-201ENSMUST00000217324 327 ntBASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC14.34□□□□□ -0.11
Ube3bQ9ES34 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube3bQ9ES34 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gm44831-201ENSMUST00000208469 2989 ntBASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gm9062-201ENSMUST00000117712 727 ntBASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gm11331-201ENSMUST00000119764 288 ntBASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gm20426-201ENSMUST00000173657 440 ntBASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gm34767-201ENSMUST00000191813 1062 ntBASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gm9136-201ENSMUST00000193368 454 ntBASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Gm9555-201ENSMUST00000200908 583 ntBASIC14.33□□□□□ -0.12
Ube3bQ9ES34 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3bQ9ES34 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Gm13461-201ENSMUST00000120980 662 ntBASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Gm14441-201ENSMUST00000121960 540 ntBASIC14.32□□□□□ -0.12
Ube3bQ9ES34 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Gm22993-201ENSMUST00000175423 254 ntBASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Gm36991-201ENSMUST00000191800 648 ntBASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Gm36943-201ENSMUST00000194422 282 ntBASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3bQ9ES34 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms