Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim40Q3UWA4 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Gm12036-201ENSMUST00000120008 530 ntBASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Gm11918-201ENSMUST00000121660 179 ntBASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Proscos-202ENSMUST00000178990 666 ntBASIC11.29□□□□□ -0.6
Trim40Q3UWA4 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Gm38140-201ENSMUST00000193617 2755 ntBASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Gm9115-201ENSMUST00000120192 1348 ntBASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Gm10110-202ENSMUST00000228705 3220 ntBASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim40Q3UWA4 Gm28719-201ENSMUST00000187779 1757 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Auts2-212ENSMUST00000178555 309 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Gm5896-201ENSMUST00000189662 1024 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Gm38092-201ENSMUST00000195600 653 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 AC153974.2-201ENSMUST00000218577 1025 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 AC162801.1-201ENSMUST00000220612 198 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Gm8598-201ENSMUST00000221184 836 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Gm18262-201ENSMUST00000222560 1946 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Gm37931-201ENSMUST00000194686 2866 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Gm15991-202ENSMUST00000212123 3565 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Rgr-203ENSMUST00000225070 4704 ntBASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim40Q3UWA4 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms