Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm3563-201ENSMUST00000172963 1628 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Zc2hc1a-203ENSMUST00000193010 1420 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm25766-201ENSMUST00000104101 131 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm5725-201ENSMUST00000105195 924 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm11544-201ENSMUST00000120215 382 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm13117-201ENSMUST00000120894 691 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm13460-201ENSMUST00000121274 353 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm10169-201ENSMUST00000121822 348 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 C030013C21Rik-201ENSMUST00000133400 795 ntTSL 3 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm15935-201ENSMUST00000141004 607 ntTSL 3 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm15734-201ENSMUST00000163076 1040 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm8653-201ENSMUST00000163096 924 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Vmn1r129-201ENSMUST00000165961 924 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Vmn1r117-201ENSMUST00000166937 924 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm8720-201ENSMUST00000168392 924 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm6164-201ENSMUST00000169774 924 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm8206-203ENSMUST00000171428 997 ntTSL 5 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm28648-201ENSMUST00000190092 343 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm43774-201ENSMUST00000196327 878 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm43507-201ENSMUST00000196411 675 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm19228-201ENSMUST00000214030 717 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Col9a1Q05722 AC154759.1-201ENSMUST00000224137 1159 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 P2rx7-202ENSMUST00000086247 712 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gm18881-201ENSMUST00000220450 1545 ntBASIC12.15□□□□□ -0.46
Col9a1Q05722 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col9a1Q05722 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Col9a1Q05722 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.47
Col9a1Q05722 Gm43981-201ENSMUST00000203285 1467 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Olfr197-202ENSMUST00000207772 1320 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Cenpk-202ENSMUST00000070761 1306 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Gm23132-201ENSMUST00000104254 132 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 Gin1-202ENSMUST00000112842 1037 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Mup-ps10-201ENSMUST00000119626 556 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 Gm14942-201ENSMUST00000119642 336 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 Gm8215-201ENSMUST00000120627 990 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 n-R5s84-201ENSMUST00000122591 109 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Mir432-201ENSMUST00000157230 75 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 Gm26619-201ENSMUST00000180396 1073 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Gm26832-201ENSMUST00000181456 1282 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Kif4-ps-202ENSMUST00000185083 652 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 Fam122c-203ENSMUST00000186314 898 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Gm37963-201ENSMUST00000195351 613 ntTSL 3 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Sox2ot-214ENSMUST00000198758 1286 ntTSL 2 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Gm45040-201ENSMUST00000207742 578 ntTSL 3 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Lrrc72-201ENSMUST00000020853 660 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Gm18043-201ENSMUST00000216741 739 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 AC125464.1-201ENSMUST00000228013 512 ntBASIC12.14□□□□□ -0.47
Col9a1Q05722 Scp2d1-201ENSMUST00000028918 760 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Col9a1Q05722 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col9a1Q05722 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms