Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC13.03□□□□□ -0.32
RaraP11416 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RaraP11416 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RaraP11416 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
RaraP11416 Gm11531-201ENSMUST00000117614 555 ntBASIC13.03□□□□□ -0.32
RaraP11416 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC13.03□□□□□ -0.32
RaraP11416 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC13.03□□□□□ -0.32
RaraP11416 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC13.03□□□□□ -0.32
RaraP11416 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 CU024892.2-201ENSMUST00000224608 832 ntBASIC13.03□□□□□ -0.32
RaraP11416 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RaraP11416 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RaraP11416 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC13.03□□□□□ -0.32
RaraP11416 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.32
RaraP11416 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RaraP11416 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RaraP11416 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC13.03□□□□□ -0.32
RaraP11416 AC167669.2-201ENSMUST00000224417 1620 ntBASIC13.02□□□□□ -0.32
RaraP11416 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RaraP11416 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
RaraP11416 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RaraP11416 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC13.02□□□□□ -0.32
RaraP11416 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
RaraP11416 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC13.02□□□□□ -0.33
RaraP11416 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC13.02□□□□□ -0.33
RaraP11416 Gm25214-201ENSMUST00000104573 129 ntBASIC13.02□□□□□ -0.33
RaraP11416 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC13.02□□□□□ -0.33
RaraP11416 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC13.02□□□□□ -0.33
RaraP11416 Mospd4-201ENSMUST00000180618 576 ntBASIC13.02□□□□□ -0.33
RaraP11416 Gm19994-201ENSMUST00000217086 586 ntBASIC13.02□□□□□ -0.33
RaraP11416 AC133598.1-201ENSMUST00000224327 660 ntBASIC13.02□□□□□ -0.33
RaraP11416 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC13.02□□□□□ -0.33
RaraP11416 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
RaraP11416 Gm6203-201ENSMUST00000209575 1342 ntBASIC13.02□□□□□ -0.33
RaraP11416 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
RaraP11416 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC13.02□□□□□ -0.33
RaraP11416 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
RaraP11416 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Gm37014-201ENSMUST00000194723 2253 ntBASIC13.01□□□□□ -0.33
RaraP11416 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC13.01□□□□□ -0.33
RaraP11416 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
RaraP11416 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
RaraP11416 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Gm12164-201ENSMUST00000121695 551 ntBASIC13.01□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 64.2 ms