Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC12.42□□□□□ -0.42
Sdc4O35988 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Sdc4O35988 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC12.42□□□□□ -0.42
Sdc4O35988 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Gm12857-201ENSMUST00000117678 592 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Gm11660-201ENSMUST00000120955 412 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC12.42□□□□□ -0.42
Sdc4O35988 Gm20426-201ENSMUST00000173657 440 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Gm8100-201ENSMUST00000182906 988 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC12.42□□□□□ -0.42
Sdc4O35988 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC12.42□□□□□ -0.42
Sdc4O35988 Gm2965-201ENSMUST00000198365 343 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC12.42□□□□□ -0.42
Sdc4O35988 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC12.42□□□□□ -0.42
Sdc4O35988 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Gm5705-201ENSMUST00000066241 711 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
Sdc4O35988 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Gm9072-201ENSMUST00000218390 1514 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Gm44414-201ENSMUST00000203660 2109 ntBASIC12.41□□□□□ -0.42
Sdc4O35988 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.41□□□□□ -0.42
Sdc4O35988 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC12.41□□□□□ -0.42
Sdc4O35988 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC12.41□□□□□ -0.42
Sdc4O35988 Gm6335-201ENSMUST00000118081 1194 ntBASIC12.41□□□□□ -0.42
Sdc4O35988 Gm13611-201ENSMUST00000118269 318 ntBASIC12.41□□□□□ -0.42
Sdc4O35988 Gm14724-201ENSMUST00000118400 537 ntBASIC12.41□□□□□ -0.42
Sdc4O35988 Gm7816-201ENSMUST00000119884 1194 ntBASIC12.41□□□□□ -0.42
Sdc4O35988 Gm15542-201ENSMUST00000121585 1194 ntBASIC12.41□□□□□ -0.42
Sdc4O35988 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
Sdc4O35988 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Sdc4O35988 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Gm6905-201ENSMUST00000205729 511 ntBASIC12.41□□□□□ -0.42
Sdc4O35988 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC12.41□□□□□ -0.42
Sdc4O35988 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC12.41□□□□□ -0.42
Sdc4O35988 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.41□□□□□ -0.42
Sdc4O35988 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
Sdc4O35988 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.42
Sdc4O35988 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12.41□□□□□ -0.42
Sdc4O35988 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC12.41□□□□□ -0.42
Sdc4O35988 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Sdc4O35988 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc4O35988 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Sdc4O35988 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Sdc4O35988 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.4□□□□□ -0.42
Sdc4O35988 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
Sdc4O35988 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC12.4□□□□□ -0.42
Sdc4O35988 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC12.4□□□□□ -0.42
Sdc4O35988 Gm11509-201ENSMUST00000117358 325 ntBASIC12.4□□□□□ -0.42
Sdc4O35988 Gm14263-201ENSMUST00000117955 746 ntBASIC12.4□□□□□ -0.42
Sdc4O35988 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sdc4O35988 Gm8546-201ENSMUST00000178288 1264 ntBASIC12.4□□□□□ -0.42
Sdc4O35988 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms