Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Gm9445-201ENSMUST00000207454 1285 ntBASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Gm9004-201ENSMUST00000218739 1222 ntBASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
Smc1aQ9CU62 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
Smc1aQ9CU62 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Smc1aQ9CU62 Gm43984-201ENSMUST00000204572 2864 ntBASIC13.58□□□□□ -0.23
Smc1aQ9CU62 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm8228-201ENSMUST00000189949 2192 ntBASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm26684-202ENSMUST00000228229 8257 ntBASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm14704-201ENSMUST00000120300 874 ntBASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm14277-201ENSMUST00000121195 360 ntBASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Ighv8-10-201ENSMUST00000199579 358 ntBASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm5950-201ENSMUST00000213337 772 ntBASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
Smc1aQ9CU62 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Gm25214-201ENSMUST00000104573 129 ntBASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Gm11930-201ENSMUST00000117788 190 ntBASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Gm11439-201ENSMUST00000118598 409 ntBASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Gm13492-201ENSMUST00000119772 665 ntBASIC13.57□□□□□ -0.24
Smc1aQ9CU62 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Gm27341-201ENSMUST00000183570 106 ntBASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Gm43416-201ENSMUST00000201916 1015 ntBASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Gm19208-201ENSMUST00000213861 912 ntBASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Smc1aQ9CU62 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms