Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 AL645783.1-201ENSMUST00000221416 1832 ntBASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.59
Trim40Q3UWA4 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.59
Trim40Q3UWA4 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.59
Trim40Q3UWA4 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm44775-201ENSMUST00000207266 1456 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm8213-201ENSMUST00000118191 441 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm12091-201ENSMUST00000146791 830 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm27243-201ENSMUST00000183964 521 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm6473-201ENSMUST00000188572 1210 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm37042-201ENSMUST00000193816 581 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm37922-201ENSMUST00000195596 455 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 AC150560.1-201ENSMUST00000227731 1187 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm36957-201ENSMUST00000192982 2824 ntBASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim40Q3UWA4 Gm43823-201ENSMUST00000197391 1808 ntBASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Gm38194-201ENSMUST00000194529 2211 ntBASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Gm2231-201ENSMUST00000125661 612 ntBASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Gm7287-201ENSMUST00000205267 602 ntBASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 AC158982.1-201ENSMUST00000228377 901 ntBASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim40Q3UWA4 n-R5s77-201ENSMUST00000083757 119 ntBASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms