Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gm11949-201ENSMUST00000117640 372 ntBASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gm15207-201ENSMUST00000119259 442 ntBASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gm27910-201ENSMUST00000185004 107 ntBASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gm29499-201ENSMUST00000189151 486 ntBASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gm28329-201ENSMUST00000191208 689 ntBASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gm29171-201ENSMUST00000191397 486 ntBASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gm37299-201ENSMUST00000193951 826 ntBASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gm5537-201ENSMUST00000091117 1252 ntBASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3aQ3ULJ3 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm7537-201ENSMUST00000221660 1414 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 AC241621.2-201ENSMUST00000223991 2151 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 n-R5s64-201ENSMUST00000102019 119 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm12795-201ENSMUST00000117594 539 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm13328-201ENSMUST00000120816 1020 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Mir1901-201ENSMUST00000122616 78 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm5706-201ENSMUST00000181525 993 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm38210-201ENSMUST00000191944 809 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm43186-201ENSMUST00000198130 824 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm44270-201ENSMUST00000203084 1234 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm44980-201ENSMUST00000205826 314 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 AC098716.1-201ENSMUST00000213527 703 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 AC132901.1-201ENSMUST00000224345 508 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Upf3aQ3ULJ3 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.71□□□□□ -0.37
Upf3aQ3ULJ3 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Upf3aQ3ULJ3 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Upf3aQ3ULJ3 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 70.7 ms