Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Olfr570-202ENSMUST00000209778 1423 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Msx1P13297 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC11.7□□□□□ -0.54
Msx1P13297 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Gm43463-201ENSMUST00000195967 1803 ntBASIC11.7□□□□□ -0.54
Msx1P13297 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC11.7□□□□□ -0.54
Msx1P13297 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Smgc-203ENSMUST00000109276 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Gm11628-201ENSMUST00000117568 171 ntBASIC11.7□□□□□ -0.54
Msx1P13297 Gm13033-201ENSMUST00000117591 1057 ntBASIC11.7□□□□□ -0.54
Msx1P13297 n-R5s14-201ENSMUST00000122688 107 ntBASIC11.7□□□□□ -0.54
Msx1P13297 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC11.7□□□□□ -0.54
Msx1P13297 A230072E10Rik-201ENSMUST00000146161 676 ntTSL 5 BASIC11.7□□□□□ -0.54
Msx1P13297 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Gm9550-201ENSMUST00000161130 862 ntBASIC11.7□□□□□ -0.54
Msx1P13297 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Msx1P13297 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC11.7□□□□□ -0.54
Msx1P13297 Gm28721-201ENSMUST00000187649 918 ntTSL 3 BASIC11.7□□□□□ -0.54
Msx1P13297 Gm18717-201ENSMUST00000192744 1241 ntBASIC11.7□□□□□ -0.54
Msx1P13297 Gm38092-201ENSMUST00000195600 653 ntBASIC11.7□□□□□ -0.54
Msx1P13297 Gm5149-202ENSMUST00000199980 1250 ntTSL 2 BASIC11.7□□□□□ -0.54
Msx1P13297 Gm19590-201ENSMUST00000201551 1195 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Gm43263-201ENSMUST00000201619 560 ntTSL 5 BASIC11.7□□□□□ -0.54
Msx1P13297 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC11.7□□□□□ -0.54
Msx1P13297 Gm5178-201ENSMUST00000219380 898 ntBASIC11.7□□□□□ -0.54
Msx1P13297 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Speer4c-201ENSMUST00000095005 1159 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Speer4d-201ENSMUST00000095006 1194 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Olfr1242-201ENSMUST00000099777 1053 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Msx1P13297 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC11.7□□□□□ -0.54
Msx1P13297 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
Msx1P13297 Gm44942-201ENSMUST00000096093 2072 ntBASIC11.7□□□□□ -0.54
Msx1P13297 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Msx1P13297 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Msx1P13297 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msx1P13297 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Msx1P13297 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
Msx1P13297 Smim8-202ENSMUST00000108131 892 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
Msx1P13297 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msx1P13297 Mir1192-201ENSMUST00000116976 121 ntBASIC11.69□□□□□ -0.54
Msx1P13297 Gm15703-201ENSMUST00000120250 880 ntBASIC11.69□□□□□ -0.54
Msx1P13297 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC11.69□□□□□ -0.54
Msx1P13297 Gm15937-201ENSMUST00000120727 1235 ntBASIC11.69□□□□□ -0.54
Msx1P13297 Gm11980-201ENSMUST00000121445 986 ntBASIC11.69□□□□□ -0.54
Msx1P13297 Gm8089-201ENSMUST00000122463 968 ntBASIC11.69□□□□□ -0.54
Msx1P13297 Gm12088-201ENSMUST00000137364 520 ntTSL 2 BASIC11.69□□□□□ -0.54
Msx1P13297 Gm12600-201ENSMUST00000146704 708 ntTSL 3 BASIC11.69□□□□□ -0.54
Msx1P13297 Gm7467-201ENSMUST00000185173 652 ntBASIC11.69□□□□□ -0.54
Msx1P13297 Gm7967-201ENSMUST00000190991 399 ntTSL 3 BASIC11.69□□□□□ -0.54
Msx1P13297 Olfr181-203ENSMUST00000205742 1104 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Msx1P13297 Gm44651-201ENSMUST00000207343 372 ntBASIC11.69□□□□□ -0.54
Msx1P13297 Gm44582-201ENSMUST00000209125 445 ntBASIC11.69□□□□□ -0.54
Msx1P13297 Gm45399-201ENSMUST00000209955 1016 ntBASIC11.69□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms