Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Gm37259-201ENSMUST00000193903 849 ntBASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Gm43365-201ENSMUST00000196522 2106 ntBASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trim3Q9R1R2 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 AC160410.1-201ENSMUST00000219298 1972 ntBASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Gm2238-201ENSMUST00000192074 3669 ntBASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Gm11531-201ENSMUST00000117614 555 ntBASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Gm7118-201ENSMUST00000200167 1003 ntBASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Gm5950-201ENSMUST00000213337 772 ntBASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Trim3Q9R1R2 Arhgef3-204ENSMUST00000225949 3198 ntBASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 AC167669.2-201ENSMUST00000224417 1620 ntBASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm8038-201ENSMUST00000164674 2044 ntBASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms