Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC11.36□□□□□ -0.59
Trim40Q3UWA4 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Snord83b-201ENSMUST00000104546 94 ntBASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm9124-201ENSMUST00000191789 1092 ntBASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm9113-201ENSMUST00000192510 1018 ntBASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm9131-201ENSMUST00000193557 1089 ntBASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm9121-201ENSMUST00000193749 1071 ntBASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm8463-201ENSMUST00000208573 613 ntBASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 AC134254.1-201ENSMUST00000221362 167 ntBASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm5626-201ENSMUST00000222151 1058 ntBASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gm43963-201ENSMUST00000203466 2488 ntBASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Trim40Q3UWA4 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Gm13123-201ENSMUST00000122173 492 ntBASIC11.34□□□□□ -0.59
Trim40Q3UWA4 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Gm26185-201ENSMUST00000157692 266 ntBASIC11.34□□□□□ -0.59
Trim40Q3UWA4 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim40Q3UWA4 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 84.3 ms