Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gm23085-201ENSMUST00000157849 293 ntBASIC10.38□□□□□ -0.75
Col8a1Q00780 Gm6485-201ENSMUST00000160676 439 ntBASIC10.38□□□□□ -0.75
Col8a1Q00780 Gm8100-201ENSMUST00000182906 988 ntBASIC10.38□□□□□ -0.75
Col8a1Q00780 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC10.38□□□□□ -0.75
Col8a1Q00780 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gm8894-201ENSMUST00000074642 666 ntBASIC10.38□□□□□ -0.75
Col8a1Q00780 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Col8a1Q00780 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Gm7114-201ENSMUST00000190159 1789 ntBASIC10.37□□□□□ -0.75
Col8a1Q00780 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC10.37□□□□□ -0.75
Col8a1Q00780 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Gm10731-201ENSMUST00000181171 448 ntBASIC10.37□□□□□ -0.75
Col8a1Q00780 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Gm19931-201ENSMUST00000198920 368 ntBASIC10.37□□□□□ -0.75
Col8a1Q00780 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Gm9111-201ENSMUST00000219394 709 ntBASIC10.37□□□□□ -0.75
Col8a1Q00780 AC154252.2-201ENSMUST00000223593 767 ntBASIC10.37□□□□□ -0.75
Col8a1Q00780 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Col8a1Q00780 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col8a1Q00780 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC10.37□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms