Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Col3a1P08121 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Col3a1P08121 AC099645.1-201ENSMUST00000226476 1105 ntBASIC14.31□□□□□ -0.12
Col3a1P08121 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC14.31□□□□□ -0.12
Col3a1P08121 Gm5451-201ENSMUST00000080545 579 ntBASIC14.31□□□□□ -0.12
Col3a1P08121 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Col3a1P08121 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Col3a1P08121 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Col3a1P08121 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Col3a1P08121 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
Col3a1P08121 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Col3a1P08121 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC14.31□□□□□ -0.12
Col3a1P08121 Gm7150-201ENSMUST00000122032 981 ntBASIC14.31□□□□□ -0.12
Col3a1P08121 Mir1901-201ENSMUST00000122616 78 ntBASIC14.31□□□□□ -0.12
Col3a1P08121 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC14.31□□□□□ -0.12
Col3a1P08121 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC14.31□□□□□ -0.12
Col3a1P08121 Gm44421-201ENSMUST00000205064 1221 ntBASIC14.31□□□□□ -0.12
Col3a1P08121 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC14.31□□□□□ -0.12
Col3a1P08121 AC165260.2-203ENSMUST00000224237 336 ntBASIC14.31□□□□□ -0.12
Col3a1P08121 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Vmn1r38-201ENSMUST00000226457 3462 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Col3a1P08121 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Gm38577-201ENSMUST00000221531 4545 ntBASIC14.3□□□□□ -0.12
Col3a1P08121 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC14.3□□□□□ -0.12
Col3a1P08121 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC14.3□□□□□ -0.12
Col3a1P08121 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC14.3□□□□□ -0.12
Col3a1P08121 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Col3a1P08121 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC14.3□□□□□ -0.12
Col3a1P08121 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 AC122350.1-201ENSMUST00000228135 533 ntBASIC14.3□□□□□ -0.12
Col3a1P08121 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Col3a1P08121 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col3a1P08121 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Col3a1P08121 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Gm9358-201ENSMUST00000183067 927 ntBASIC14.29□□□□□ -0.12
Col3a1P08121 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC14.29□□□□□ -0.12
Col3a1P08121 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col3a1P08121 Gm43365-201ENSMUST00000196522 2106 ntBASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms