Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cpsf3Q9QXK7 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 AC171277.1-201ENSMUST00000216902 1441 ntBASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Gm12380-201ENSMUST00000119012 544 ntBASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Gm5363-201ENSMUST00000211927 938 ntBASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cpsf3Q9QXK7 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Gm23949-201ENSMUST00000104027 127 ntBASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Gm5419-201ENSMUST00000119301 527 ntBASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Gm14277-201ENSMUST00000121195 360 ntBASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Gm16505-201ENSMUST00000179981 232 ntBASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Gm5706-201ENSMUST00000181525 993 ntBASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 AC107638.1-201ENSMUST00000213690 1061 ntBASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Gm6189-201ENSMUST00000164487 2082 ntBASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
Cpsf3Q9QXK7 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Gm11511-201ENSMUST00000118146 540 ntBASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC13.03□□□□□ -0.32
Cpsf3Q9QXK7 Gm18893-201ENSMUST00000198416 943 ntBASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 77.7 ms