Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 BC028471-201ENSMUST00000200937 520 ntTSL 2 BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Rpl15-ps5-201ENSMUST00000205636 605 ntBASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Gm33016-201ENSMUST00000221224 677 ntTSL 3 BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 AC163638.2-201ENSMUST00000224920 827 ntBASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Olfr71-201ENSMUST00000055401 939 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Mettl18-202ENSMUST00000111490 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gm5740-201ENSMUST00000211003 1857 ntBASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Trav13-2-201ENSMUST00000103658 390 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Snx10-202ENSMUST00000114439 968 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gm16219-201ENSMUST00000120096 274 ntBASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gm46349-201ENSMUST00000219678 917 ntTSL 5 BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gal-201ENSMUST00000025842 712 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Crygd-201ENSMUST00000045028 613 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Adam20-201ENSMUST00000056331 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gm6560-201ENSMUST00000198588 1591 ntBASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Tstd2-201ENSMUST00000107770 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gm9133-201ENSMUST00000118289 540 ntBASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Myl1-203ENSMUST00000120415 621 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gm15329-201ENSMUST00000121408 155 ntBASIC16.1■□□□□ 0.17
Scn4aQ9ER60 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Pdc-201ENSMUST00000165062 1246 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gm25591-201ENSMUST00000177317 94 ntBASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gm42687-201ENSMUST00000199075 164 ntBASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Gm5291-201ENSMUST00000201965 899 ntBASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Ghrl-203ENSMUST00000203588 237 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Olfr209-202ENSMUST00000208246 428 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 1700018G05Rik-201ENSMUST00000211116 386 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 AC140314.1-201ENSMUST00000219549 554 ntBASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Tnnt1-201ENSMUST00000071798 1027 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Olfr171-202ENSMUST00000205467 1406 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC16.1■□□□□ 0.17
Scn4aQ9ER60 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Gm44851-201ENSMUST00000205735 2309 ntBASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Cryzl1-202ENSMUST00000114023 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Cryzl1-206ENSMUST00000124282 1187 ntTSL 5 BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Gm17225-201ENSMUST00000172051 497 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Rps9-201ENSMUST00000006496 751 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Atp6v1c2-202ENSMUST00000095820 1549 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn4aQ9ER60 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Gm7168-201ENSMUST00000088809 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Gm12745-201ENSMUST00000121767 214 ntBASIC16.08■□□□□ 0.17
Scn4aQ9ER60 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 2410124H12Rik-201ENSMUST00000160494 706 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Gm38145-201ENSMUST00000192319 693 ntBASIC16.08■□□□□ 0.17
Scn4aQ9ER60 CT025531.1-201ENSMUST00000214534 622 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Gm6859-201ENSMUST00000218614 989 ntBASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Gimap7-201ENSMUST00000052503 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Olfr1394-201ENSMUST00000052668 939 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Scn4aQ9ER60 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Scn4aQ9ER60 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Scn4aQ9ER60 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC16.08■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms