Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Gm23912-201ENSMUST00000104687 87 ntBASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Gm13736-201ENSMUST00000119272 253 ntBASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Gm13342-201ENSMUST00000121055 207 ntBASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Gm27839-201ENSMUST00000184242 106 ntBASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Gm7561-201ENSMUST00000211203 886 ntBASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Gm8793-201ENSMUST00000183069 1303 ntBASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ccdc28aQ8CEI3 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Gm43447-201ENSMUST00000198471 1535 ntBASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc28aQ8CEI3 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc28aQ8CEI3 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Gm12138-201ENSMUST00000122180 951 ntBASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Gm8494-201ENSMUST00000178171 1233 ntBASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Gm27682-201ENSMUST00000183930 110 ntBASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Gm39404-201ENSMUST00000216350 313 ntBASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
Ccdc28aQ8CEI3 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms