Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm12579-201ENSMUST00000118040 783 ntBASIC17.06■□□□□ 0.32
Usp47Q8BY87 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Gm5714-201ENSMUST00000197343 566 ntBASIC17.06■□□□□ 0.32
Usp47Q8BY87 Gm45575-201ENSMUST00000210283 548 ntBASIC17.06■□□□□ 0.32
Usp47Q8BY87 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp47Q8BY87 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Gm11663-201ENSMUST00000117888 290 ntBASIC17.05■□□□□ 0.32
Usp47Q8BY87 Gm14441-201ENSMUST00000121960 540 ntBASIC17.05■□□□□ 0.32
Usp47Q8BY87 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Gm5732-201ENSMUST00000182596 1007 ntBASIC17.05■□□□□ 0.32
Usp47Q8BY87 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC17.05■□□□□ 0.32
Usp47Q8BY87 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC17.05■□□□□ 0.32
Usp47Q8BY87 Gm1821-202ENSMUST00000227415 750 ntBASIC17.05■□□□□ 0.32
Usp47Q8BY87 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 AC154517.2-201ENSMUST00000220829 2458 ntBASIC17.05■□□□□ 0.32
Usp47Q8BY87 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp47Q8BY87 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 n-R5s14-201ENSMUST00000122688 107 ntBASIC17.04■□□□□ 0.32
Usp47Q8BY87 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC17.04■□□□□ 0.32
Usp47Q8BY87 Gm37246-201ENSMUST00000192665 835 ntBASIC17.04■□□□□ 0.32
Usp47Q8BY87 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp47Q8BY87 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Gm12165-201ENSMUST00000117047 342 ntBASIC17.03■□□□□ 0.32
Usp47Q8BY87 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC17.03■□□□□ 0.32
Usp47Q8BY87 Gm10051-201ENSMUST00000145209 414 ntBASIC17.03■□□□□ 0.32
Usp47Q8BY87 Ighv1-48-201ENSMUST00000191795 294 ntBASIC17.03■□□□□ 0.32
Usp47Q8BY87 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC17.03■□□□□ 0.32
Usp47Q8BY87 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Gm29100-201ENSMUST00000187564 4410 ntBASIC17.03■□□□□ 0.32
Usp47Q8BY87 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp47Q8BY87 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms