Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm43727-201ENSMUST00000198021 2647 ntBASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm12314-201ENSMUST00000118104 538 ntBASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm5904-201ENSMUST00000210286 865 ntBASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm4935-201ENSMUST00000221316 1198 ntBASIC11.79□□□□□ -0.52
Usp39Q3TIX9 CT573034.1-201ENSMUST00000222983 313 ntBASIC11.79□□□□□ -0.52
Usp39Q3TIX9 n-R5s195-201ENSMUST00000082891 119 ntBASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Mir433-201ENSMUST00000093564 124 ntBASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm7993-201ENSMUST00000200970 1384 ntBASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm45342-201ENSMUST00000210903 1363 ntBASIC11.79□□□□□ -0.52
Usp39Q3TIX9 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm6023-201ENSMUST00000118217 606 ntBASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm15808-201ENSMUST00000119046 604 ntBASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm13736-201ENSMUST00000119272 253 ntBASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm7809-201ENSMUST00000153199 742 ntBASIC11.78□□□□□ -0.52
Usp39Q3TIX9 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm4034-201ENSMUST00000187674 480 ntBASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm37489-201ENSMUST00000191883 159 ntBASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm45925-201ENSMUST00000218882 744 ntBASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Cts7-204ENSMUST00000225321 1257 ntBASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm2238-201ENSMUST00000192074 3669 ntBASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC11.78□□□□□ -0.52
Usp39Q3TIX9 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usp39Q3TIX9 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Usp39Q3TIX9 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Usp39Q3TIX9 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Usp39Q3TIX9 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.77□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms