Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC10.41□□□□□ -0.74
Col8a1Q00780 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Col8a1Q00780 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm45638-201ENSMUST00000211507 2878 ntBASIC10.4□□□□□ -0.74
Col8a1Q00780 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm12314-201ENSMUST00000118104 538 ntBASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm14921-201ENSMUST00000118643 908 ntBASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm13668-201ENSMUST00000119237 1001 ntBASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm8199-201ENSMUST00000121323 823 ntBASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm11980-201ENSMUST00000121445 986 ntBASIC10.4□□□□□ -0.74
Col8a1Q00780 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC10.4□□□□□ -0.74
Col8a1Q00780 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC10.4□□□□□ -0.74
Col8a1Q00780 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm42657-201ENSMUST00000201746 211 ntBASIC10.4□□□□□ -0.74
Col8a1Q00780 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm45909-201ENSMUST00000212413 1031 ntBASIC10.4□□□□□ -0.74
Col8a1Q00780 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Col8a1Q00780 n-R5s211-201ENSMUST00000093689 119 ntBASIC10.4□□□□□ -0.74
Col8a1Q00780 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Col8a1Q00780 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Col8a1Q00780 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Col8a1Q00780 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.75
Col8a1Q00780 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Col8a1Q00780 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.75
Col8a1Q00780 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC10.4□□□□□ -0.75
Col8a1Q00780 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.75
Col8a1Q00780 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC10.4□□□□□ -0.75
Col8a1Q00780 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC10.4□□□□□ -0.75
Col8a1Q00780 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Gm4780-202ENSMUST00000215200 2644 ntBASIC10.39□□□□□ -0.75
Col8a1Q00780 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Gm13384-201ENSMUST00000117166 1344 ntBASIC10.39□□□□□ -0.75
Col8a1Q00780 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC10.39□□□□□ -0.75
Col8a1Q00780 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Col8a1Q00780 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Gm37299-201ENSMUST00000193951 826 ntBASIC10.39□□□□□ -0.75
Col8a1Q00780 Gm42518-201ENSMUST00000196277 938 ntBASIC10.39□□□□□ -0.75
Col8a1Q00780 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC10.39□□□□□ -0.75
Col8a1Q00780 AC122408.1-201ENSMUST00000218949 218 ntBASIC10.39□□□□□ -0.75
Col8a1Q00780 AC126799.1-201ENSMUST00000221976 246 ntBASIC10.39□□□□□ -0.75
Col8a1Q00780 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC10.39□□□□□ -0.75
Col8a1Q00780 AC140375.1-201ENSMUST00000225421 694 ntBASIC10.39□□□□□ -0.75
Col8a1Q00780 Gm9785-201ENSMUST00000062642 1006 ntBASIC10.39□□□□□ -0.75
Col8a1Q00780 Gm10288-201ENSMUST00000084614 537 ntBASIC10.39□□□□□ -0.75
Col8a1Q00780 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Col8a1Q00780 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 77.7 ms