Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC14.1□□□□□ -0.15
Traf1P39428 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC14.1□□□□□ -0.15
Traf1P39428 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Gm15711-201ENSMUST00000118889 535 ntBASIC14.1□□□□□ -0.15
Traf1P39428 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 B9d1os-201ENSMUST00000137010 674 ntBASIC14.1□□□□□ -0.15
Traf1P39428 Gm18734-201ENSMUST00000172937 808 ntBASIC14.1□□□□□ -0.15
Traf1P39428 Gm9630-201ENSMUST00000178304 885 ntBASIC14.1□□□□□ -0.15
Traf1P39428 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Traf1P39428 Mir7677-201ENSMUST00000184226 67 ntBASIC14.1□□□□□ -0.15
Traf1P39428 AU022133-201ENSMUST00000200601 873 ntBASIC14.1□□□□□ -0.15
Traf1P39428 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Traf1P39428 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Traf1P39428 Gm9544-201ENSMUST00000223349 2482 ntBASIC14.1□□□□□ -0.15
Traf1P39428 Gm43721-201ENSMUST00000199677 2313 ntBASIC14.1□□□□□ -0.15
Traf1P39428 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC14.1□□□□□ -0.15
Traf1P39428 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Traf1P39428 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC14.1□□□□□ -0.15
Traf1P39428 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Traf1P39428 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Gm12380-201ENSMUST00000119012 544 ntBASIC14.09□□□□□ -0.15
Traf1P39428 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC14.09□□□□□ -0.15
Traf1P39428 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Traf1P39428 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC14.09□□□□□ -0.15
Traf1P39428 Gm17827-201ENSMUST00000211825 742 ntBASIC14.09□□□□□ -0.15
Traf1P39428 CT571245.2-201ENSMUST00000218421 305 ntBASIC14.09□□□□□ -0.15
Traf1P39428 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 AC159195.1-201ENSMUST00000225867 2086 ntBASIC14.09□□□□□ -0.15
Traf1P39428 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC14.09□□□□□ -0.15
Traf1P39428 Nupl1-206ENSMUST00000225111 2936 ntBASIC14.09□□□□□ -0.15
Traf1P39428 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
Traf1P39428 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC14.09□□□□□ -0.15
Traf1P39428 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Traf1P39428 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Traf1P39428 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 AC123619.2-202ENSMUST00000225097 1568 ntBASIC14.09□□□□□ -0.15
Traf1P39428 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Traf1P39428 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Traf1P39428 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Traf1P39428 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Gm43417-201ENSMUST00000201586 5207 ntBASIC14.08□□□□□ -0.16
Traf1P39428 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Traf1P39428 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Traf1P39428 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC14.08□□□□□ -0.16
Traf1P39428 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC14.08□□□□□ -0.16
Traf1P39428 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC14.08□□□□□ -0.16
Traf1P39428 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC14.08□□□□□ -0.16
Traf1P39428 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Traf1P39428 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Gm34767-201ENSMUST00000191813 1062 ntBASIC14.08□□□□□ -0.16
Traf1P39428 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC14.08□□□□□ -0.16
Traf1P39428 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC14.08□□□□□ -0.16
Traf1P39428 AC169036.1-201ENSMUST00000227994 296 ntBASIC14.08□□□□□ -0.16
Traf1P39428 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 122.3 ms