Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm15487-201ENSMUST00000122373 465 ntBASIC10.04□□□□□ -0.8
Hmgb3O54879 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC10.04□□□□□ -0.8
Hmgb3O54879 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Ighv1-60-201ENSMUST00000195816 405 ntBASIC10.04□□□□□ -0.8
Hmgb3O54879 Gm2756-201ENSMUST00000195851 400 ntBASIC10.04□□□□□ -0.8
Hmgb3O54879 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC10.04□□□□□ -0.8
Hmgb3O54879 AC132317.1-201ENSMUST00000227227 962 ntBASIC10.04□□□□□ -0.8
Hmgb3O54879 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Anapc1-201ENSMUST00000014499 8942 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Zfp831-201ENSMUST00000059452 9807 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Tktl2-202ENSMUST00000183187 5485 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC10.03□□□□□ -0.8
Hmgb3O54879 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm15371-201ENSMUST00000117057 784 ntBASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm14760-201ENSMUST00000121831 999 ntBASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC10.03□□□□□ -0.8
Hmgb3O54879 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC10.03□□□□□ -0.8
Hmgb3O54879 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm27702-201ENSMUST00000184512 56 ntBASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm27989-201ENSMUST00000184721 107 ntBASIC10.03□□□□□ -0.8
Hmgb3O54879 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm28693-202ENSMUST00000190758 331 ntBASIC10.03□□□□□ -0.8
Hmgb3O54879 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm42599-201ENSMUST00000201308 469 ntBASIC10.03□□□□□ -0.8
Hmgb3O54879 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Sh3rf2-201ENSMUST00000072008 5092 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Adamts9-205ENSMUST00000167391 6033 ntTSL 5 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Tor1aip2-201ENSMUST00000060404 5135 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC10.03□□□□□ -0.8
Hmgb3O54879 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hmgb3O54879 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
Hmgb3O54879 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Hmgb3O54879 Diaph1-201ENSMUST00000025337 5596 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.8
Hmgb3O54879 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC10.02□□□□□ -0.8
Hmgb3O54879 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.8
Hmgb3O54879 Pask-201ENSMUST00000027493 5779 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Hmgb3O54879 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Hmgb3O54879 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC10.02□□□□□ -0.8
Hmgb3O54879 Ank1-206ENSMUST00000117662 6257 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.8
Hmgb3O54879 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Hmgb3O54879 Gm38273-201ENSMUST00000194987 2382 ntBASIC10.02□□□□□ -0.8
Hmgb3O54879 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
Hmgb3O54879 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
Hmgb3O54879 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 369.8 ms