Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Gm15617-201ENSMUST00000118973 771 ntBASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Gm12273-201ENSMUST00000137418 1084 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC16.14■□□□□ 0.17
Scn4aQ9ER60 AC125409.3-201ENSMUST00000223488 653 ntBASIC16.14■□□□□ 0.17
Scn4aQ9ER60 CT571271.1-201ENSMUST00000227071 670 ntBASIC16.14■□□□□ 0.17
Scn4aQ9ER60 AC158986.2-201ENSMUST00000227487 618 ntBASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Larp1b-204ENSMUST00000099121 1030 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Gm17836-201ENSMUST00000191976 1302 ntBASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Ighv14-3-201ENSMUST00000103469 399 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Sh3gl2-202ENSMUST00000107184 671 ntTSL 2 BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Ndufb5-202ENSMUST00000121778 574 ntTSL 3 BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Krtap6-3-202ENSMUST00000185581 520 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 BB187690-201ENSMUST00000198619 1176 ntBASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Gm45060-201ENSMUST00000203293 593 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Krtap6-3-201ENSMUST00000079151 444 ntBASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Scn4aQ9ER60 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Erg-209ENSMUST00000177450 1280 ntTSL 5 BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Gm6946-201ENSMUST00000182237 987 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Mrgprb7-ps-201ENSMUST00000190238 964 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Nt5dc1-202ENSMUST00000099973 761 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Gm13583-202ENSMUST00000151931 1476 ntTSL 2 BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 AC165351.1-201ENSMUST00000219078 2020 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Gm38089-201ENSMUST00000193585 1514 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Vmn1r38-201ENSMUST00000226457 3462 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Il17rd-203ENSMUST00000225146 3366 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Mir1190-201ENSMUST00000116925 96 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Gm14176-201ENSMUST00000121302 477 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Ube4bos3-201ENSMUST00000155845 756 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Gm7445-201ENSMUST00000192115 340 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Gm37723-201ENSMUST00000194480 565 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Gm40332-201ENSMUST00000199847 938 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Gm2566-201ENSMUST00000201267 431 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 AC164614.1-201ENSMUST00000216038 397 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 AC134869.4-202ENSMUST00000224350 837 ntBASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn4aQ9ER60 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Acnat1-201ENSMUST00000095086 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Wfdc2-203ENSMUST00000109345 558 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Ncbp2-202ENSMUST00000115178 515 ntTSL 5 BASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Gm26119-201ENSMUST00000175601 104 ntBASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Gm8601-201ENSMUST00000182096 909 ntBASIC16.11■□□□□ 0.17
Scn4aQ9ER60 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms