Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Cd300lg-201ENSMUST00000017453 2353 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Gm43174-201ENSMUST00000195914 2445 ntBASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ccdc40Q8BI79 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ccdc40Q8BI79 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Gm11425-201ENSMUST00000119608 498 ntBASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Mir1982-201ENSMUST00000157368 74 ntBASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Gm9396-201ENSMUST00000076703 567 ntBASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Gm37391-201ENSMUST00000194891 2318 ntBASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ccdc40Q8BI79 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Btrc-209ENSMUST00000224478 2194 ntBASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Gm5370-201ENSMUST00000187187 574 ntBASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Gm24136-201ENSMUST00000083374 165 ntBASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ccdc40Q8BI79 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Muc13-201ENSMUST00000023520 2942 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC12.75□□□□□ -0.37
Ccdc40Q8BI79 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 82.3 ms