Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AC164437.3-201ENSMUST00000228323 347 ntBASIC18.42■□□□□ 0.54
Cux1P53564 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Cux1P53564 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Gm6655-201ENSMUST00000201932 1309 ntBASIC18.42■□□□□ 0.54
Cux1P53564 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Cux1P53564 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cux1P53564 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Cux1P53564 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC18.41■□□□□ 0.54
Cux1P53564 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cux1P53564 Gm11354-201ENSMUST00000121974 422 ntBASIC18.41■□□□□ 0.54
Cux1P53564 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cux1P53564 Gm8723-201ENSMUST00000166076 820 ntBASIC18.41■□□□□ 0.54
Cux1P53564 Gm8701-201ENSMUST00000169259 874 ntBASIC18.41■□□□□ 0.54
Cux1P53564 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Cux1P53564 Gm18706-201ENSMUST00000210053 1066 ntBASIC18.41■□□□□ 0.54
Cux1P53564 CT573047.1-201ENSMUST00000223652 851 ntBASIC18.41■□□□□ 0.54
Cux1P53564 Ap3s1-202ENSMUST00000224622 978 ntBASIC18.41■□□□□ 0.54
Cux1P53564 Gm8325-201ENSMUST00000099086 453 ntBASIC18.41■□□□□ 0.54
Cux1P53564 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cux1P53564 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cux1P53564 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Cux1P53564 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Cux1P53564 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cux1P53564 Gm15784-201ENSMUST00000120260 1462 ntBASIC18.41■□□□□ 0.54
Cux1P53564 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Cux1P53564 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cux1P53564 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cux1P53564 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC18.41■□□□□ 0.54
Cux1P53564 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cux1P53564 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Cux1P53564 Gm21759-201ENSMUST00000178345 1828 ntBASIC18.41■□□□□ 0.54
Cux1P53564 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Gm22442-201ENSMUST00000157256 144 ntBASIC18.4■□□□□ 0.54
Cux1P53564 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC18.4■□□□□ 0.54
Cux1P53564 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC18.4■□□□□ 0.54
Cux1P53564 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
Cux1P53564 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 CT030653.1-201ENSMUST00000224382 1279 ntBASIC18.4■□□□□ 0.54
Cux1P53564 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Cux1P53564 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
Cux1P53564 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cux1P53564 Gm7278-201ENSMUST00000119836 1401 ntBASIC18.39■□□□□ 0.54
Cux1P53564 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Cux1P53564 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Cux1P53564 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC18.39■□□□□ 0.54
Cux1P53564 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC18.39■□□□□ 0.54
Cux1P53564 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Cux1P53564 Ighv2-1-201ENSMUST00000170946 353 ntBASIC18.39■□□□□ 0.54
Cux1P53564 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC18.39■□□□□ 0.54
Cux1P53564 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
Cux1P53564 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
Cux1P53564 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
Cux1P53564 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
Cux1P53564 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cux1P53564 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cux1P53564 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC18.39■□□□□ 0.53
Cux1P53564 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cux1P53564 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cux1P53564 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cux1P53564 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
Cux1P53564 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cux1P53564 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cux1P53564 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cux1P53564 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
Cux1P53564 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cux1P53564 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC18.39■□□□□ 0.53
Cux1P53564 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC18.39■□□□□ 0.53
Cux1P53564 Gm14395-201ENSMUST00000120494 563 ntBASIC18.39■□□□□ 0.53
Cux1P53564 Gm20392-201ENSMUST00000173047 701 ntBASIC18.39■□□□□ 0.53
Cux1P53564 Gm20495-201ENSMUST00000173902 235 ntBASIC18.39■□□□□ 0.53
Cux1P53564 Gm26134-201ENSMUST00000178484 110 ntBASIC18.39■□□□□ 0.53
Cux1P53564 Gm8197-202ENSMUST00000193422 934 ntBASIC18.39■□□□□ 0.53
Cux1P53564 Ighv1-60-201ENSMUST00000195816 405 ntBASIC18.39■□□□□ 0.53
Cux1P53564 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC18.39■□□□□ 0.53
Cux1P53564 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Cux1P53564 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC18.39■□□□□ 0.53
Cux1P53564 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Cux1P53564 Gm6722-201ENSMUST00000221586 390 ntBASIC18.39■□□□□ 0.53
Cux1P53564 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC18.39■□□□□ 0.53
Cux1P53564 CT010506.1-201ENSMUST00000223673 349 ntBASIC18.39■□□□□ 0.53
Cux1P53564 AC129308.3-201ENSMUST00000225652 524 ntBASIC18.39■□□□□ 0.53
Cux1P53564 Gm10263-201ENSMUST00000085163 300 ntBASIC18.39■□□□□ 0.53
Cux1P53564 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms