Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Gm4984-201ENSMUST00000115987 360 ntBASIC12.03□□□□□ -0.48
Lima1Q9ERG0 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Tyms-ps-201ENSMUST00000219550 915 ntBASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 AC114008.2-201ENSMUST00000227699 1347 ntBASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Lima1Q9ERG0 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lima1Q9ERG0 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Gm1335-201ENSMUST00000121653 386 ntBASIC12.02□□□□□ -0.49
Lima1Q9ERG0 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Gm16296-201ENSMUST00000159905 325 ntBASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC12.02□□□□□ -0.49
Lima1Q9ERG0 AC130829.1-201ENSMUST00000221548 494 ntBASIC12.02□□□□□ -0.49
Lima1Q9ERG0 AC122459.1-201ENSMUST00000228373 885 ntBASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Gm10339-203ENSMUST00000225409 1671 ntBASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Gm7553-201ENSMUST00000185805 1426 ntBASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lima1Q9ERG0 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms