Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Aamdc-206ENSMUST00000136757 789 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 4930444A19Rik-202ENSMUST00000190007 633 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 1700019D03Rik-205ENSMUST00000190726 702 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Naca-201ENSMUST00000073868 885 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 4930593A02Rik-201ENSMUST00000181694 1437 ntTSL 5 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Cst10-202ENSMUST00000109938 729 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Gm16210-201ENSMUST00000122161 610 ntBASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Gm17782-201ENSMUST00000174345 880 ntBASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Gm18733-202ENSMUST00000174447 401 ntBASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Gm37858-201ENSMUST00000192759 1231 ntBASIC16.16■□□□□ 0.18
Scn4aQ9ER60 4933407I05Rik-202ENSMUST00000213467 420 ntTSL 2 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Gm9102-201ENSMUST00000219250 465 ntBASIC16.16■□□□□ 0.18
Scn4aQ9ER60 AC107711.4-201ENSMUST00000228948 440 ntBASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Cst10-201ENSMUST00000047008 804 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Oprm1-208ENSMUST00000092734 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn4aQ9ER60 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm13426-201ENSMUST00000117887 795 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Rpl7a-ps11-201ENSMUST00000118791 801 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm24140-201ENSMUST00000122773 326 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm26047-201ENSMUST00000157308 113 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Stard6-206ENSMUST00000174118 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm27168-201ENSMUST00000183394 361 ntTSL 3 BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm29642-201ENSMUST00000186170 921 ntTSL 2 BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm30946-201ENSMUST00000198288 724 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm26047-202ENSMUST00000198840 115 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm31520-203ENSMUST00000204874 647 ntTSL 3 BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 AC153153.1-201ENSMUST00000225803 793 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm16477-201ENSMUST00000085365 801 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm17415-201ENSMUST00000096427 789 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Sybu-209ENSMUST00000228639 4113 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 5730422E09Rik-201ENSMUST00000180733 1740 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm10842-201ENSMUST00000100338 369 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Olfr874-201ENSMUST00000115004 933 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm3828-201ENSMUST00000121817 257 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm23432-201ENSMUST00000157181 131 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm7928-201ENSMUST00000181249 701 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Rian-208ENSMUST00000182370 352 ntTSL 3 BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Id2-203ENSMUST00000222667 958 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 AC122035.1-201ENSMUST00000227576 1016 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Gm44260-201ENSMUST00000204946 2094 ntBASIC16.15■□□□□ 0.18
Scn4aQ9ER60 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn4aQ9ER60 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Scn4aQ9ER60 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Gm13456-201ENSMUST00000118928 1365 ntBASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scn4aQ9ER60 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms