Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC17.13■□□□□ 0.33
Usp47Q8BY87 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp47Q8BY87 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC17.12■□□□□ 0.33
Usp47Q8BY87 Gm11331-201ENSMUST00000119764 288 ntBASIC17.12■□□□□ 0.33
Usp47Q8BY87 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Gm38117-201ENSMUST00000194653 939 ntBASIC17.12■□□□□ 0.33
Usp47Q8BY87 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC17.12■□□□□ 0.33
Usp47Q8BY87 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC17.12■□□□□ 0.33
Usp47Q8BY87 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp47Q8BY87 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Gm6580-201ENSMUST00000117504 1357 ntBASIC17.11■□□□□ 0.33
Usp47Q8BY87 AC091458.1-201ENSMUST00000220902 1361 ntBASIC17.11■□□□□ 0.33
Usp47Q8BY87 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Gm6335-201ENSMUST00000118081 1194 ntBASIC17.11■□□□□ 0.33
Usp47Q8BY87 Gm7816-201ENSMUST00000119884 1194 ntBASIC17.11■□□□□ 0.33
Usp47Q8BY87 Gm15542-201ENSMUST00000121585 1194 ntBASIC17.11■□□□□ 0.33
Usp47Q8BY87 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Usp47Q8BY87 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Gm8100-201ENSMUST00000182906 988 ntBASIC17.11■□□□□ 0.33
Usp47Q8BY87 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Gm2965-201ENSMUST00000198365 343 ntBASIC17.11■□□□□ 0.33
Usp47Q8BY87 Gm19287-201ENSMUST00000203190 358 ntBASIC17.11■□□□□ 0.33
Usp47Q8BY87 Spcs1-203ENSMUST00000226374 592 ntBASIC17.11■□□□□ 0.33
Usp47Q8BY87 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Usp47Q8BY87 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp47Q8BY87 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Gm44831-201ENSMUST00000208469 2989 ntBASIC17.1■□□□□ 0.33
Usp47Q8BY87 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Gm11660-201ENSMUST00000120955 412 ntBASIC17.1■□□□□ 0.33
Usp47Q8BY87 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Gm22902-201ENSMUST00000158488 302 ntBASIC17.1■□□□□ 0.33
Usp47Q8BY87 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Gm9785-201ENSMUST00000062642 1006 ntBASIC17.1■□□□□ 0.33
Usp47Q8BY87 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp47Q8BY87 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp47Q8BY87 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
Usp47Q8BY87 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 98.1 ms