Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Gm27196-201ENSMUST00000184787 2582 ntBASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Gm12579-201ENSMUST00000118040 783 ntBASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Gm6867-201ENSMUST00000219165 425 ntBASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Gm26616-202ENSMUST00000195676 3107 ntBASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp40Q8BWR4 Gm14150-201ENSMUST00000122404 1354 ntBASIC16.64■□□□□ 0.26
Usp40Q8BWR4 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.26
Usp40Q8BWR4 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Usp40Q8BWR4 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm12208-201ENSMUST00000122004 163 ntBASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm4726-201ENSMUST00000135604 736 ntBASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm7666-201ENSMUST00000146631 819 ntBASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm6019-201ENSMUST00000148369 736 ntBASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm8815-201ENSMUST00000173809 620 ntBASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm44545-201ENSMUST00000208262 746 ntBASIC16.64■□□□□ 0.25
Usp40Q8BWR4 AC122876.1-201ENSMUST00000217619 825 ntBASIC16.64■□□□□ 0.25
Usp40Q8BWR4 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 AC122408.1-201ENSMUST00000218949 218 ntBASIC16.64■□□□□ 0.25
Usp40Q8BWR4 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 CT009713.8-202ENSMUST00000224732 385 ntBASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Usp40Q8BWR4 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Gm8155-201ENSMUST00000216363 1612 ntBASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Gm15566-201ENSMUST00000121130 590 ntBASIC16.63■□□□□ 0.25
Usp40Q8BWR4 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Gm5714-201ENSMUST00000197343 566 ntBASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 AC134860.1-201ENSMUST00000224867 660 ntBASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 AC155298.2-201ENSMUST00000225485 6226 ntBASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms