Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC12.89□□□□□ -0.35
Shmt1P50431 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC12.89□□□□□ -0.35
Shmt1P50431 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.89□□□□□ -0.35
Shmt1P50431 Gm5616-201ENSMUST00000165252 384 ntBASIC12.89□□□□□ -0.35
Shmt1P50431 Gm8741-201ENSMUST00000174736 384 ntBASIC12.89□□□□□ -0.35
Shmt1P50431 Mir6927-201ENSMUST00000184494 71 ntBASIC12.89□□□□□ -0.35
Shmt1P50431 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Gm45484-201ENSMUST00000210310 1141 ntBASIC12.89□□□□□ -0.35
Shmt1P50431 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Gm5455-201ENSMUST00000058710 715 ntBASIC12.89□□□□□ -0.35
Shmt1P50431 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC12.89□□□□□ -0.35
Shmt1P50431 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.89□□□□□ -0.35
Shmt1P50431 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Shmt1P50431 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC12.89□□□□□ -0.35
Shmt1P50431 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
Shmt1P50431 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Shmt1P50431 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.88□□□□□ -0.35
Shmt1P50431 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Shmt1P50431 Gm7857-201ENSMUST00000117957 358 ntBASIC12.88□□□□□ -0.35
Shmt1P50431 Gm12380-201ENSMUST00000119012 544 ntBASIC12.88□□□□□ -0.35
Shmt1P50431 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC12.88□□□□□ -0.35
Shmt1P50431 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC12.88□□□□□ -0.35
Shmt1P50431 Gm43962-201ENSMUST00000203898 190 ntBASIC12.88□□□□□ -0.35
Shmt1P50431 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Shmt1P50431 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC12.88□□□□□ -0.35
Shmt1P50431 Nsd1-205ENSMUST00000224693 852 ntBASIC12.88□□□□□ -0.35
Shmt1P50431 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Shmt1P50431 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Shmt1P50431 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Shmt1P50431 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Shmt1P50431 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Shmt1P50431 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Shmt1P50431 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Shmt1P50431 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Shmt1P50431 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
Shmt1P50431 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC12.87□□□□□ -0.35
Shmt1P50431 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
Shmt1P50431 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Gm29615-201ENSMUST00000185371 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm28224-201ENSMUST00000186078 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm29001-201ENSMUST00000186177 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm28292-201ENSMUST00000186593 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm28101-201ENSMUST00000187608 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm29076-201ENSMUST00000187689 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm28302-201ENSMUST00000187931 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm28646-201ENSMUST00000188220 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm28205-201ENSMUST00000189177 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm29032-201ENSMUST00000189797 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm28695-201ENSMUST00000190300 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm37448-201ENSMUST00000192795 697 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm4607-201ENSMUST00000206649 577 ntBASIC12.87□□□□□ -0.35
Shmt1P50431 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC12.87□□□□□ -0.35
Shmt1P50431 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Shmt1P50431 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC12.87□□□□□ -0.35
Shmt1P50431 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Shmt1P50431 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Shmt1P50431 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms