Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Dcpp3-201ENSMUST00000115428 610 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Msx1P13297 Gm16044-201ENSMUST00000118475 450 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm12616-201ENSMUST00000118594 382 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm14109-201ENSMUST00000118814 309 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm13740-201ENSMUST00000120590 310 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC11.78□□□□□ -0.52
Msx1P13297 Gm8902-201ENSMUST00000174341 1096 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm12624-201ENSMUST00000177615 382 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm12621-201ENSMUST00000177760 382 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm12615-201ENSMUST00000177970 382 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm12622-201ENSMUST00000177975 382 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm12627-201ENSMUST00000178412 382 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm12625-201ENSMUST00000179122 382 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm12614-201ENSMUST00000179586 382 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Gm12613-201ENSMUST00000180323 382 ntBASIC11.78□□□□□ -0.52
Msx1P13297 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Csn2-204ENSMUST00000196869 879 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Msx1P13297 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Msx1P13297 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Msx1P13297 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Gm6992-201ENSMUST00000217973 1607 ntBASIC11.78□□□□□ -0.52
Msx1P13297 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC11.78□□□□□ -0.52
Msx1P13297 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC11.78□□□□□ -0.52
Msx1P13297 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msx1P13297 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Msx1P13297 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Msx1P13297 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msx1P13297 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.52
Msx1P13297 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msx1P13297 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msx1P13297 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC11.77□□□□□ -0.52
Msx1P13297 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msx1P13297 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msx1P13297 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msx1P13297 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Msx1P13297 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msx1P13297 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msx1P13297 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.53
Msx1P13297 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Msx1P13297 Gm4760-201ENSMUST00000119663 1030 ntBASIC11.77□□□□□ -0.53
Msx1P13297 Olfr1038-ps-201ENSMUST00000149775 1209 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Msx1P13297 Mir1943-201ENSMUST00000158276 73 ntBASIC11.77□□□□□ -0.53
Msx1P13297 Gm15882-201ENSMUST00000161344 855 ntTSL 3 BASIC11.77□□□□□ -0.53
Msx1P13297 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Gm20659-201ENSMUST00000176599 604 ntTSL 3 BASIC11.77□□□□□ -0.53
Msx1P13297 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC11.77□□□□□ -0.53
Msx1P13297 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC11.77□□□□□ -0.53
Msx1P13297 Gm6652-201ENSMUST00000186414 1070 ntBASIC11.77□□□□□ -0.53
Msx1P13297 Gm8885-201ENSMUST00000189382 598 ntBASIC11.77□□□□□ -0.53
Msx1P13297 Gm42565-201ENSMUST00000197839 572 ntTSL 5 BASIC11.77□□□□□ -0.53
Msx1P13297 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC11.77□□□□□ -0.53
Msx1P13297 Gm44262-201ENSMUST00000204969 372 ntBASIC11.77□□□□□ -0.53
Msx1P13297 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC11.77□□□□□ -0.53
Msx1P13297 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC11.77□□□□□ -0.53
Msx1P13297 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 AC153974.2-201ENSMUST00000218577 1025 ntBASIC11.77□□□□□ -0.53
Msx1P13297 1700105G05Rik-201ENSMUST00000222238 411 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 AC152169.2-201ENSMUST00000224558 613 ntBASIC11.77□□□□□ -0.53
Msx1P13297 Gm8385-201ENSMUST00000058999 643 ntBASIC11.77□□□□□ -0.53
Msx1P13297 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Msx1P13297 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.53
Msx1P13297 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC11.77□□□□□ -0.53
Msx1P13297 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC11.77□□□□□ -0.53
Msx1P13297 Clec12b-202ENSMUST00000112082 1335 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC11.77□□□□□ -0.53
Msx1P13297 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC11.77□□□□□ -0.53
Msx1P13297 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msx1P13297 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Msx1P13297 Gm45266-201ENSMUST00000210111 2173 ntBASIC11.77□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms