Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm26232-201ENSMUST00000083360 166 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Gm24136-201ENSMUST00000083374 165 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Rnu1b6-201ENSMUST00000083839 166 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Gm26110-201ENSMUST00000083971 165 ntBASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.21
Smc1aQ9CU62 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC13.71□□□□□ -0.22
Smc1aQ9CU62 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Gm37513-201ENSMUST00000194830 2268 ntBASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Gm38378-201ENSMUST00000195153 2268 ntBASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Mir3547-201ENSMUST00000175461 88 ntBASIC13.7□□□□□ -0.22
Smc1aQ9CU62 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Gm31256-201ENSMUST00000194705 506 ntBASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Gm3786-201ENSMUST00000202659 378 ntBASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Gm32025-201ENSMUST00000217960 307 ntBASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Smc1aQ9CU62 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Gm6210-201ENSMUST00000204734 1942 ntBASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Gm8176-201ENSMUST00000191297 1099 ntBASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Smc1aQ9CU62 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 81.1 ms