Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Traf1P39428 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Traf1P39428 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Traf1P39428 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.17□□□□□ -0.14
Traf1P39428 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC14.17□□□□□ -0.14
Traf1P39428 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC14.17□□□□□ -0.14
Traf1P39428 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Traf1P39428 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
Traf1P39428 Gm16481-201ENSMUST00000119074 1227 ntBASIC14.17□□□□□ -0.14
Traf1P39428 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC14.17□□□□□ -0.14
Traf1P39428 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Gm28071-201ENSMUST00000190355 478 ntBASIC14.17□□□□□ -0.14
Traf1P39428 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 AC159205.5-202ENSMUST00000224849 386 ntBASIC14.17□□□□□ -0.14
Traf1P39428 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC14.17□□□□□ -0.14
Traf1P39428 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Gm44292-201ENSMUST00000205194 2364 ntBASIC14.17□□□□□ -0.14
Traf1P39428 Matn2-203ENSMUST00000226766 3252 ntBASIC14.17□□□□□ -0.14
Traf1P39428 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC14.17□□□□□ -0.14
Traf1P39428 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Traf1P39428 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Traf1P39428 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Traf1P39428 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Gm44758-201ENSMUST00000206096 2068 ntBASIC14.16□□□□□ -0.14
Traf1P39428 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC14.16□□□□□ -0.14
Traf1P39428 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Traf1P39428 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC14.16□□□□□ -0.14
Traf1P39428 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC14.16□□□□□ -0.14
Traf1P39428 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Traf1P39428 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC14.16□□□□□ -0.14
Traf1P39428 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC14.16□□□□□ -0.14
Traf1P39428 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Traf1P39428 CU062626.3-201ENSMUST00000225522 1411 ntBASIC14.15□□□□□ -0.14
Traf1P39428 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC14.15□□□□□ -0.14
Traf1P39428 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC14.15□□□□□ -0.14
Traf1P39428 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Traf1P39428 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC14.15□□□□□ -0.14
Traf1P39428 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
Traf1P39428 Zfp125-201ENSMUST00000079237 2488 ntBASIC14.15□□□□□ -0.14
Traf1P39428 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC14.15□□□□□ -0.14
Traf1P39428 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms