Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
Hmgb3O54879 6430573F11Rik-203ENSMUST00000147525 5820 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Gpr37-201ENSMUST00000054867 4974 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC10.09□□□□□ -0.79
Hmgb3O54879 AC126262.1-201ENSMUST00000221802 1904 ntBASIC10.09□□□□□ -0.79
Hmgb3O54879 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Gm17230-201ENSMUST00000171194 3942 ntBASIC10.09□□□□□ -0.79
Hmgb3O54879 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC10.09□□□□□ -0.79
Hmgb3O54879 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC10.09□□□□□ -0.79
Hmgb3O54879 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.79
Hmgb3O54879 Gm12539-201ENSMUST00000121549 1098 ntBASIC10.09□□□□□ -0.79
Hmgb3O54879 Gm12291-201ENSMUST00000121627 311 ntBASIC10.09□□□□□ -0.79
Hmgb3O54879 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC10.09□□□□□ -0.79
Hmgb3O54879 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
Hmgb3O54879 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Gm8396-201ENSMUST00000057361 823 ntBASIC10.09□□□□□ -0.79
Hmgb3O54879 Usp45-202ENSMUST00000065111 6003 ntAPPRIS P3 TSL 5 BASIC10.09□□□□□ -0.79
Hmgb3O54879 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Gli3-201ENSMUST00000110510 8170 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Edaradd-201ENSMUST00000179308 6668 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 AC101945.2-201ENSMUST00000227886 1377 ntBASIC10.09□□□□□ -0.79
Hmgb3O54879 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC10.09□□□□□ -0.79
Hmgb3O54879 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
Hmgb3O54879 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Gm42706-201ENSMUST00000199733 1910 ntBASIC10.09□□□□□ -0.79
Hmgb3O54879 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.79
Hmgb3O54879 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Zmym3-209ENSMUST00000121520 5564 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
Hmgb3O54879 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
Hmgb3O54879 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Hmgb3O54879 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Gm44831-201ENSMUST00000208469 2989 ntBASIC10.08□□□□□ -0.8
Hmgb3O54879 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Dcc-201ENSMUST00000073379 4855 ntTSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Crocc2-201ENSMUST00000138595 7132 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC10.08□□□□□ -0.8
Hmgb3O54879 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Gm44069-201ENSMUST00000204898 506 ntBASIC10.08□□□□□ -0.8
Hmgb3O54879 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Gm8227-201ENSMUST00000223306 571 ntBASIC10.08□□□□□ -0.8
Hmgb3O54879 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Myo9a-205ENSMUST00000135298 12198 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC10.08□□□□□ -0.8
Hmgb3O54879 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Gm17281-201ENSMUST00000180732 3589 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Clec14a-201ENSMUST00000062254 4571 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Tnfsf13b-203ENSMUST00000207792 4771 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 174.5 ms