Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm37489-201ENSMUST00000191883 159 ntBASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Gm3961-201ENSMUST00000204425 994 ntBASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Trim3Q9R1R2 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Cog3-203ENSMUST00000227473 4197 ntBASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Gm10434-201ENSMUST00000101158 471 ntBASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Gm4986-201ENSMUST00000119731 549 ntBASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Gm27177-202ENSMUST00000183514 2703 ntBASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Trim3Q9R1R2 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gm13342-201ENSMUST00000121055 207 ntBASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gm5637-201ENSMUST00000153890 1119 ntBASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gm43822-201ENSMUST00000200285 476 ntBASIC11.53□□□□□ -0.56
Trim3Q9R1R2 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gm5904-201ENSMUST00000210286 865 ntBASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Cts7-204ENSMUST00000225321 1257 ntBASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Morn2-202ENSMUST00000227729 656 ntBASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gm43823-201ENSMUST00000197391 1808 ntBASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC11.53□□□□□ -0.56
Trim3Q9R1R2 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms