Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm42853-201ENSMUST00000201273 1387 ntBASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm4366-201ENSMUST00000201488 1342 ntBASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm12314-201ENSMUST00000118104 538 ntBASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm12241-201ENSMUST00000118330 726 ntBASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm11597-201ENSMUST00000121423 964 ntBASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm8908-201ENSMUST00000121633 1024 ntBASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm15904-201ENSMUST00000154515 487 ntTSL 3 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm8227-201ENSMUST00000223306 571 ntBASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm43075-201ENSMUST00000198613 3905 ntBASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Gm43868-201ENSMUST00000205187 2114 ntBASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Gm18222-201ENSMUST00000202416 1387 ntBASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Gm5597-201ENSMUST00000182353 1193 ntBASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Gm2546-201ENSMUST00000182630 991 ntBASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 AC159246.1-201ENSMUST00000214478 249 ntBASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Gm9368-201ENSMUST00000219348 831 ntBASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Prpf40aQ9R1C7 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm43365-201ENSMUST00000196522 2106 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm37105-201ENSMUST00000192251 2085 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm15370-201ENSMUST00000117158 253 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm5637-201ENSMUST00000153890 1119 ntBASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Prpf40aQ9R1C7 Gm38266-201ENSMUST00000194931 421 ntBASIC13.48□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms