Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Gm10146-201ENSMUST00000072739 309 ntBASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Ddx28Q9CWT6 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Dnmt3a-203ENSMUST00000111186 5424 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Gm18062-201ENSMUST00000208020 547 ntBASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Gm18055-201ENSMUST00000208254 547 ntBASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Gm25857-201ENSMUST00000082788 129 ntBASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Mir339-201ENSMUST00000083659 96 ntBASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Gm6091-201ENSMUST00000098307 165 ntBASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 AC123834.1-201ENSMUST00000225346 2043 ntBASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Gm43365-201ENSMUST00000196522 2106 ntBASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Ddx28Q9CWT6 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Gm8617-201ENSMUST00000118796 2222 ntBASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Snord83b-201ENSMUST00000104546 94 ntBASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Gm5638-201ENSMUST00000118618 1258 ntBASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Gm26185-201ENSMUST00000157692 266 ntBASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ddx28Q9CWT6 Gm5896-201ENSMUST00000189662 1024 ntBASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms