Protein–RNA interactions for Protein: P37913

Lig1, DNA ligase 1, mousemouse

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig1P37913 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lig1P37913 Adra1a-206ENSMUST00000225182 2337 ntBASIC13.95□□□□□ -0.18
Lig1P37913 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Gm5525-201ENSMUST00000190438 1312 ntBASIC13.94□□□□□ -0.18
Lig1P37913 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Lig1P37913 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Lig1P37913 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Lig1P37913 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Gm6506-201ENSMUST00000119775 1136 ntBASIC13.94□□□□□ -0.18
Lig1P37913 Gm12196-201ENSMUST00000120954 262 ntBASIC13.94□□□□□ -0.18
Lig1P37913 Gm14760-201ENSMUST00000121831 999 ntBASIC13.94□□□□□ -0.18
Lig1P37913 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Gm23085-201ENSMUST00000157849 293 ntBASIC13.94□□□□□ -0.18
Lig1P37913 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Gm19353-201ENSMUST00000184561 445 ntBASIC13.94□□□□□ -0.18
Lig1P37913 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC13.94□□□□□ -0.18
Lig1P37913 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Lig1P37913 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 AC133602.1-201ENSMUST00000227510 509 ntBASIC13.94□□□□□ -0.18
Lig1P37913 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Lig1P37913 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
Lig1P37913 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Lig1P37913 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.94□□□□□ -0.18
Lig1P37913 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
Lig1P37913 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC13.94□□□□□ -0.18
Lig1P37913 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lig1P37913 Gm44758-201ENSMUST00000206096 2068 ntBASIC13.94□□□□□ -0.18
Lig1P37913 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC13.93□□□□□ -0.18
Lig1P37913 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC13.93□□□□□ -0.18
Lig1P37913 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Lig1P37913 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC13.93□□□□□ -0.18
Lig1P37913 Gm23596-201ENSMUST00000104304 132 ntBASIC13.93□□□□□ -0.18
Lig1P37913 Gm12165-201ENSMUST00000117047 342 ntBASIC13.93□□□□□ -0.18
Lig1P37913 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
Lig1P37913 Gm8343-201ENSMUST00000182705 994 ntBASIC13.93□□□□□ -0.18
Lig1P37913 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 CT571245.2-201ENSMUST00000218421 305 ntBASIC13.93□□□□□ -0.18
Lig1P37913 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC13.93□□□□□ -0.18
Lig1P37913 Gm9826-201ENSMUST00000029124 1299 ntBASIC13.93□□□□□ -0.18
Lig1P37913 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Gm26448-201ENSMUST00000082446 203 ntBASIC13.93□□□□□ -0.18
Lig1P37913 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC13.93□□□□□ -0.18
Lig1P37913 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lig1P37913 Gm44292-201ENSMUST00000205194 2364 ntBASIC13.93□□□□□ -0.18
Lig1P37913 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lig1P37913 Gm4735-201ENSMUST00000138679 1302 ntBASIC13.92□□□□□ -0.18
Lig1P37913 Gm5855-201ENSMUST00000200240 1305 ntBASIC13.92□□□□□ -0.18
Lig1P37913 AC154262.2-202ENSMUST00000225158 1331 ntBASIC13.92□□□□□ -0.18
Lig1P37913 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lig1P37913 Gm37391-201ENSMUST00000194891 2318 ntBASIC13.92□□□□□ -0.18
Lig1P37913 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lig1P37913 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lig1P37913 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lig1P37913 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lig1P37913 Gm28719-201ENSMUST00000187779 1757 ntBASIC13.92□□□□□ -0.18
Lig1P37913 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lig1P37913 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lig1P37913 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lig1P37913 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC13.92□□□□□ -0.18
Lig1P37913 Gm11511-201ENSMUST00000118146 540 ntBASIC13.92□□□□□ -0.18
Lig1P37913 Gm13461-201ENSMUST00000120980 662 ntBASIC13.92□□□□□ -0.18
Lig1P37913 Gm15432-201ENSMUST00000121106 195 ntBASIC13.92□□□□□ -0.18
Lig1P37913 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lig1P37913 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms