Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 CT025624.1-201ENSMUST00000224007 2700 ntBASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Prpf40aQ9R1C7 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Prpf40aQ9R1C7 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Prpf40aQ9R1C7 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Prpf40aQ9R1C7 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Prpf40aQ9R1C7 AC157950.1-201ENSMUST00000217561 2168 ntBASIC13.52□□□□□ -0.24
Prpf40aQ9R1C7 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Prpf40aQ9R1C7 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Prpf40aQ9R1C7 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Gm4986-201ENSMUST00000119731 549 ntBASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Gm13297-201ENSMUST00000120205 934 ntBASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Gm27501-201ENSMUST00000183599 107 ntBASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Morn2-202ENSMUST00000227729 656 ntBASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Gm42941-201ENSMUST00000200347 1321 ntBASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Prpf40aQ9R1C7 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm37737-201ENSMUST00000195013 1638 ntBASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm3756-201ENSMUST00000169182 1355 ntBASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm13315-201ENSMUST00000120376 991 ntBASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm13342-201ENSMUST00000121055 207 ntBASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm37201-201ENSMUST00000191845 523 ntBASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm37083-201ENSMUST00000195784 711 ntTSL 2 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm6007-201ENSMUST00000208170 823 ntBASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm10608-202ENSMUST00000213924 676 ntBASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm9004-201ENSMUST00000218739 1222 ntBASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Prpf40aQ9R1C7 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC13.5□□□□□ -0.25
Prpf40aQ9R1C7 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms