Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 AC135669.1-202ENSMUST00000216742 540 ntBASIC13.75□□□□□ -0.21
Smc1aQ9CU62 CT030182.1-201ENSMUST00000225935 533 ntBASIC13.75□□□□□ -0.21
Smc1aQ9CU62 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 CT573086.2-201ENSMUST00000227277 4992 ntBASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Gm44942-201ENSMUST00000096093 2072 ntBASIC13.75□□□□□ -0.21
Smc1aQ9CU62 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Gm43727-201ENSMUST00000198021 2647 ntBASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Gm14726-201ENSMUST00000120623 896 ntBASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 AC069562.3-201ENSMUST00000225387 587 ntBASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Gm43174-201ENSMUST00000195914 2445 ntBASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Smc1aQ9CU62 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Gm42943-201ENSMUST00000199676 3242 ntBASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Smc1aQ9CU62 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 83.6 ms