Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Gm37042-201ENSMUST00000193816 581 ntBASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Gm43416-201ENSMUST00000201916 1015 ntBASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Gm2128-201ENSMUST00000108009 2560 ntBASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Gm14704-201ENSMUST00000120300 874 ntBASIC12.12□□□□□ -0.47
Lima1Q9ERG0 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Gm22121-201ENSMUST00000175148 54 ntBASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Gm44772-201ENSMUST00000207623 1191 ntBASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC12.12□□□□□ -0.47
Lima1Q9ERG0 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Gm6211-201ENSMUST00000147973 4275 ntBASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Gm19692-201ENSMUST00000203856 2084 ntBASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Gm26185-201ENSMUST00000157692 266 ntBASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lima1Q9ERG0 Gm17208-201ENSMUST00000168388 535 ntBASIC12.11□□□□□ -0.47
Lima1Q9ERG0 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 60.5 ms