Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Ighv1-48-201ENSMUST00000191795 294 ntBASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Gm6905-201ENSMUST00000205729 511 ntBASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Gm9129-201ENSMUST00000218173 1689 ntBASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 AC126257.1-201ENSMUST00000213195 1536 ntBASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Gm13809-201ENSMUST00000117921 597 ntBASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Gm15004-201ENSMUST00000119192 630 ntBASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Gm19459-201ENSMUST00000176240 835 ntBASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Usp40Q8BWR4 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp40Q8BWR4 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Usp40Q8BWR4 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp40Q8BWR4 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp40Q8BWR4 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp40Q8BWR4 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Usp40Q8BWR4 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Usp40Q8BWR4 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp40Q8BWR4 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Usp40Q8BWR4 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Usp40Q8BWR4 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Gm15131-201ENSMUST00000119124 595 ntBASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Gm5706-201ENSMUST00000181525 993 ntBASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Gm10774-201ENSMUST00000188689 204 ntBASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Mir7686-201ENSMUST00000200604 57 ntBASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Gm8285-201ENSMUST00000208293 759 ntBASIC16.76■□□□□ 0.27
Usp40Q8BWR4 D9Wsu149-201ENSMUST00000214169 594 ntBASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 AC159195.1-201ENSMUST00000225867 2086 ntBASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC16.76■□□□□ 0.27
Usp40Q8BWR4 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Gm11663-201ENSMUST00000117888 290 ntBASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC16.75■□□□□ 0.27
Usp40Q8BWR4 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms