Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm37297-201ENSMUST00000192974 2384 ntBASIC12.33□□□□□ -0.44
Col9a1Q05722 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col9a1Q05722 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Col9a1Q05722 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col9a1Q05722 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col9a1Q05722 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm10558-201ENSMUST00000147494 1661 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Psmf1-202ENSMUST00000109869 1384 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Serpina3a-202ENSMUST00000109965 1204 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Cldn34d-201ENSMUST00000114054 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Itpa-ps1-201ENSMUST00000117207 597 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm15352-201ENSMUST00000118696 270 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm14213-201ENSMUST00000119778 768 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm14993-201ENSMUST00000121180 164 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm12885-201ENSMUST00000122246 328 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm12811-201ENSMUST00000125237 667 ntTSL 3 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC12.32□□□□□ -0.44
Col9a1Q05722 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm20528-202ENSMUST00000174821 802 ntTSL 3 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Vmn1r-ps23-201ENSMUST00000175708 295 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm20694-201ENSMUST00000176943 404 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm27675-201ENSMUST00000184527 94 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm2345-201ENSMUST00000193451 589 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm45356-201ENSMUST00000209274 823 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm18597-201ENSMUST00000209519 694 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 CT485606.1-201ENSMUST00000213187 878 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Cd84-201ENSMUST00000042302 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Lyrm1-201ENSMUST00000054440 752 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Olfr1161-201ENSMUST00000054845 1012 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm9785-201ENSMUST00000062642 1006 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm43273-201ENSMUST00000199649 2594 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm6198-201ENSMUST00000191337 2929 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Gm44441-201ENSMUST00000203642 2475 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 CAAA01216754.1-201ENSMUST00000215882 1836 ntBASIC12.32□□□□□ -0.44
Col9a1Q05722 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col9a1Q05722 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col9a1Q05722 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 E330011O21Rik-204ENSMUST00000210839 1361 ntTSL 5 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm43522-201ENSMUST00000196697 1922 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm42449-201ENSMUST00000200349 2258 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm11960-202ENSMUST00000181063 2858 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Gm25414-201ENSMUST00000101814 107 ntBASIC12.31□□□□□ -0.44
Col9a1Q05722 Ighv1-5-201ENSMUST00000103494 294 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Col9a1Q05722 Tnnt3-213ENSMUST00000105952 1040 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Tnnt3-215ENSMUST00000105954 1052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Tnnt3-216ENSMUST00000105955 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Tnnt3-218ENSMUST00000105958 1050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Col9a1Q05722 Cep112-202ENSMUST00000106715 1161 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 59 ms