Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 n-R5s141-201ENSMUST00000178066 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm23284-201ENSMUST00000178069 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s100-201ENSMUST00000178106 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s111-201ENSMUST00000178203 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s105-201ENSMUST00000178499 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s149-201ENSMUST00000178520 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s103-201ENSMUST00000178755 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s123-201ENSMUST00000178804 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s142-201ENSMUST00000178820 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s144-201ENSMUST00000178859 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s139-201ENSMUST00000178975 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s134-201ENSMUST00000178983 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s136-201ENSMUST00000179080 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm25018-201ENSMUST00000179081 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s104-201ENSMUST00000179107 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s113-201ENSMUST00000179143 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s133-201ENSMUST00000179275 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s117-201ENSMUST00000179431 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm25212-201ENSMUST00000179432 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s138-201ENSMUST00000179476 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s122-201ENSMUST00000179500 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s143-201ENSMUST00000179542 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s107-201ENSMUST00000179704 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm26391-201ENSMUST00000179843 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s110-201ENSMUST00000179995 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s128-201ENSMUST00000180096 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 n-R5s124-201ENSMUST00000180334 119 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Nnmt-201ENSMUST00000034808 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Cib4-201ENSMUST00000065486 769 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm24089-201ENSMUST00000093696 109 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Fhl1-202ENSMUST00000114768 1337 ntTSL 5 BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Mir705-201ENSMUST00000102058 82 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm7861-201ENSMUST00000110749 506 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm7849-201ENSMUST00000110752 488 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm9372-201ENSMUST00000168454 430 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 4930505M18Rik-201ENSMUST00000175854 1288 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm28356-201ENSMUST00000186941 927 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm20781-201ENSMUST00000193154 693 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm21736-201ENSMUST00000195399 693 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Eif4ebp3-201ENSMUST00000036765 744 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Rpl9-201ENSMUST00000057885 738 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Mir341-201ENSMUST00000093593 96 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gm6478-201ENSMUST00000099450 742 ntBASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Scn4aQ9ER60 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Gm37348-201ENSMUST00000193104 1789 ntBASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Brcc3-203ENSMUST00000118428 2093 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Gm42840-201ENSMUST00000200303 2251 ntBASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Gm4294-201ENSMUST00000105169 614 ntBASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Cenpx-204ENSMUST00000106155 700 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Rps18-ps1-201ENSMUST00000120838 459 ntBASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Gm12668-201ENSMUST00000134966 575 ntTSL 3 BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Gm4034-201ENSMUST00000187674 480 ntBASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Zcwpw2-203ENSMUST00000187803 372 ntBASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Fkbp6-202ENSMUST00000201534 1287 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Sult2b1-207ENSMUST00000210754 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 AC102847.1-202ENSMUST00000226313 1245 ntBASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Rnasek-201ENSMUST00000040428 611 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Scn4aQ9ER60 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms