Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Smc1aQ9CU62 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Smc1aQ9CU62 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Smc1aQ9CU62 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Smc1aQ9CU62 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Smc1aQ9CU62 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Smc1aQ9CU62 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Smc1aQ9CU62 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Smc1aQ9CU62 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Mir5132-201ENSMUST00000175166 71 ntBASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Gm37042-201ENSMUST00000193816 581 ntBASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 AC122371.3-201ENSMUST00000223402 1061 ntBASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Smc1aQ9CU62 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm6161-201ENSMUST00000121942 1102 ntBASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm6254-201ENSMUST00000168178 1072 ntBASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm6153-201ENSMUST00000172004 1058 ntBASIC13.79□□□□□ -0.2
Smc1aQ9CU62 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm5641-202ENSMUST00000198699 1080 ntBASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm19931-201ENSMUST00000198920 368 ntBASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm6458-201ENSMUST00000211573 635 ntBASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm5363-201ENSMUST00000211927 938 ntBASIC13.79□□□□□ -0.2
Smc1aQ9CU62 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Smc1aQ9CU62 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Gm12997-201ENSMUST00000120207 640 ntBASIC13.78□□□□□ -0.2
Smc1aQ9CU62 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms