Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Traf1P39428 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Traf1P39428 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Traf1P39428 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Traf1P39428 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Traf1P39428 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Traf1P39428 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Traf1P39428 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
Traf1P39428 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Traf1P39428 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Traf1P39428 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Traf1P39428 Gm42840-201ENSMUST00000200303 2251 ntBASIC14.27□□□□□ -0.12
Traf1P39428 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Traf1P39428 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Traf1P39428 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Traf1P39428 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Traf1P39428 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Traf1P39428 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Traf1P39428 Gm13142-201ENSMUST00000117213 1453 ntBASIC14.27□□□□□ -0.12
Traf1P39428 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC14.27□□□□□ -0.12
Traf1P39428 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Traf1P39428 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Traf1P39428 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC14.27□□□□□ -0.12
Traf1P39428 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Traf1P39428 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Traf1P39428 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Traf1P39428 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC14.27□□□□□ -0.13
Traf1P39428 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Traf1P39428 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Traf1P39428 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Traf1P39428 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC14.27□□□□□ -0.13
Traf1P39428 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Traf1P39428 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Traf1P39428 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Traf1P39428 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Traf1P39428 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Traf1P39428 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Traf1P39428 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Traf1P39428 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Traf1P39428 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Traf1P39428 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Traf1P39428 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
Traf1P39428 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC14.27□□□□□ -0.13
Traf1P39428 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Traf1P39428 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC14.26□□□□□ -0.13
Traf1P39428 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 Gm24934-201ENSMUST00000103764 111 ntBASIC14.26□□□□□ -0.13
Traf1P39428 Gm12286-201ENSMUST00000119246 1002 ntBASIC14.26□□□□□ -0.13
Traf1P39428 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 Gm17812-201ENSMUST00000204935 318 ntBASIC14.26□□□□□ -0.13
Traf1P39428 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 Gm9445-201ENSMUST00000207454 1285 ntBASIC14.26□□□□□ -0.13
Traf1P39428 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Traf1P39428 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Traf1P39428 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Traf1P39428 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC14.25□□□□□ -0.13
Traf1P39428 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Traf1P39428 Gm18626-201ENSMUST00000221512 1409 ntBASIC14.25□□□□□ -0.13
Traf1P39428 Gm45342-201ENSMUST00000210903 1363 ntBASIC14.25□□□□□ -0.13
Traf1P39428 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
Traf1P39428 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC14.25□□□□□ -0.13
Traf1P39428 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Traf1P39428 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms