Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC13.3□□□□□ -0.28
RaraP11416 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC13.3□□□□□ -0.28
RaraP11416 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC13.3□□□□□ -0.28
RaraP11416 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC13.3□□□□□ -0.28
RaraP11416 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
RaraP11416 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC13.3□□□□□ -0.28
RaraP11416 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC13.3□□□□□ -0.28
RaraP11416 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC13.3□□□□□ -0.28
RaraP11416 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC13.3□□□□□ -0.28
RaraP11416 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
RaraP11416 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Gm37513-201ENSMUST00000194830 2268 ntBASIC13.3□□□□□ -0.28
RaraP11416 Gm38378-201ENSMUST00000195153 2268 ntBASIC13.3□□□□□ -0.28
RaraP11416 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC13.3□□□□□ -0.28
RaraP11416 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC13.29□□□□□ -0.28
RaraP11416 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
RaraP11416 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
RaraP11416 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
RaraP11416 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Gm11424-201ENSMUST00000121929 829 ntBASIC13.29□□□□□ -0.28
RaraP11416 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC13.29□□□□□ -0.28
RaraP11416 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC13.29□□□□□ -0.28
RaraP11416 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC13.29□□□□□ -0.28
RaraP11416 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC13.29□□□□□ -0.28
RaraP11416 Gm44958-201ENSMUST00000203734 736 ntBASIC13.29□□□□□ -0.28
RaraP11416 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
RaraP11416 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC13.29□□□□□ -0.28
RaraP11416 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC13.29□□□□□ -0.28
RaraP11416 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Gm10076-201ENSMUST00000073238 384 ntBASIC13.29□□□□□ -0.28
RaraP11416 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
RaraP11416 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
RaraP11416 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC13.29□□□□□ -0.28
RaraP11416 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Gm43075-201ENSMUST00000198613 3905 ntBASIC13.29□□□□□ -0.28
RaraP11416 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC13.29□□□□□ -0.28
RaraP11416 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RaraP11416 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC13.28□□□□□ -0.28
RaraP11416 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
RaraP11416 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Gm29100-201ENSMUST00000187564 4410 ntBASIC13.28□□□□□ -0.28
RaraP11416 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC13.28□□□□□ -0.28
RaraP11416 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC13.28□□□□□ -0.28
RaraP11416 Gm13546-201ENSMUST00000135735 401 ntTSL 5 BASIC13.28□□□□□ -0.28
RaraP11416 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC13.28□□□□□ -0.28
RaraP11416 Gm2639-201ENSMUST00000156881 1297 ntBASIC13.28□□□□□ -0.28
RaraP11416 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC13.28□□□□□ -0.28
RaraP11416 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC13.28□□□□□ -0.28
RaraP11416 Gm42937-201ENSMUST00000197360 752 ntBASIC13.28□□□□□ -0.28
RaraP11416 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC13.28□□□□□ -0.28
RaraP11416 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC13.28□□□□□ -0.28
RaraP11416 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
RaraP11416 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
RaraP11416 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RaraP11416 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 75.3 ms