Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Trim3Q9R1R2 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 AC122860.2-201ENSMUST00000217967 2671 ntBASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Gm6203-201ENSMUST00000209575 1342 ntBASIC11.63□□□□□ -0.55
Trim3Q9R1R2 AC154262.2-202ENSMUST00000225158 1331 ntBASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 AC159195.1-201ENSMUST00000225867 2086 ntBASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Gm6023-201ENSMUST00000118217 606 ntBASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Gm45930-201ENSMUST00000221330 292 ntBASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim3Q9R1R2 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Mir1247-201ENSMUST00000116706 82 ntBASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Gm13786-201ENSMUST00000122371 333 ntBASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Gm8738-201ENSMUST00000172606 329 ntBASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Olfr284-202ENSMUST00000206647 966 ntBASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Gm7104-201ENSMUST00000179741 2532 ntBASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC11.62□□□□□ -0.55
Trim3Q9R1R2 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 81.2 ms