Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm13369-201ENSMUST00000119442 987 ntBASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm2231-201ENSMUST00000125661 612 ntBASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm27331-201ENSMUST00000183705 60 ntBASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm27847-201ENSMUST00000183711 107 ntBASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm27375-201ENSMUST00000183799 107 ntBASIC12.17□□□□□ -0.46
Lima1Q9ERG0 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 AC098716.1-201ENSMUST00000213527 703 ntBASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lima1Q9ERG0 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 CT009713.10-201ENSMUST00000225013 1986 ntBASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Gm16479-201ENSMUST00000121706 932 ntBASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Gm24644-201ENSMUST00000157114 139 ntBASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Gm27839-201ENSMUST00000184242 106 ntBASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Gm29705-201ENSMUST00000212598 474 ntBASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Gm37014-201ENSMUST00000194723 2253 ntBASIC12.16□□□□□ -0.46
Lima1Q9ERG0 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lima1Q9ERG0 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 73.3 ms