Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC11.24□□□□□ -0.61
Usf1Q61069 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Usf1Q61069 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC11.24□□□□□ -0.61
Usf1Q61069 Gm21998-201ENSMUST00000117552 1308 ntBASIC11.24□□□□□ -0.61
Usf1Q61069 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Usf1Q61069 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Retreg1-206ENSMUST00000228306 1430 ntBASIC11.24□□□□□ -0.61
Usf1Q61069 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Usf1Q61069 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC11.24□□□□□ -0.61
Usf1Q61069 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Usf1Q61069 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC11.23□□□□□ -0.61
Usf1Q61069 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Usf1Q61069 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
Usf1Q61069 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC11.23□□□□□ -0.61
Usf1Q61069 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Gm42928-201ENSMUST00000197338 3339 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Usf1Q61069 Gm24231-201ENSMUST00000104315 133 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Gm11956-201ENSMUST00000119525 512 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Gm12516-201ENSMUST00000120819 385 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC11.23□□□□□ -0.61
Usf1Q61069 Gm22138-201ENSMUST00000158748 128 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Mir7076-201ENSMUST00000183519 74 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC11.23□□□□□ -0.61
Usf1Q61069 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Gm42629-201ENSMUST00000199063 1102 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC11.23□□□□□ -0.61
Usf1Q61069 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC11.23□□□□□ -0.61
Usf1Q61069 AC154305.4-201ENSMUST00000224520 614 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Gm9387-201ENSMUST00000098624 1320 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Usf1Q61069 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Gm11405-201ENSMUST00000118689 1556 ntBASIC11.23□□□□□ -0.61
Usf1Q61069 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Usf1Q61069 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Usf1Q61069 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Usf1Q61069 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Usf1Q61069 Gm25880-201ENSMUST00000104331 132 ntBASIC11.22□□□□□ -0.61
Usf1Q61069 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC11.22□□□□□ -0.61
Usf1Q61069 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC11.22□□□□□ -0.61
Usf1Q61069 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Usf1Q61069 Gm11509-201ENSMUST00000117358 325 ntBASIC11.22□□□□□ -0.61
Usf1Q61069 Mir1901-201ENSMUST00000122616 78 ntBASIC11.22□□□□□ -0.61
Usf1Q61069 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
Usf1Q61069 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Gm25951-201ENSMUST00000175330 64 ntBASIC11.22□□□□□ -0.61
Usf1Q61069 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Gm27530-201ENSMUST00000184096 98 ntBASIC11.22□□□□□ -0.61
Usf1Q61069 Gm28686-201ENSMUST00000187404 609 ntBASIC11.22□□□□□ -0.61
Usf1Q61069 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC11.22□□□□□ -0.61
Usf1Q61069 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Usf1Q61069 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms